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| Home | AtcisDB | AtTFDB | Regulatory Network |
NSF2010 Project |
People | Downloads | Links | Publications |
Genome
Resources |
| The Arabidopsis Information Resource (TAIR) provides a comprehensive resource for the scientific community working with Arabidopsis thaliana, a widely used model plant |
| TIGR's Genome Projects are a collection of curated databases containing DNA and protein sequence, gene expression, cellular role, protein family, and taxonomic data for microbes, plants and humans |
| NCBI |
NCBI creates public databases,
conducts research in computational biology, develops software tools
for analyzing genome data, and disseminates biomedical information
- all for the better understanding of molecular processes affecting
human health and disease |
Gene
Expression Resources |
| MPSS produces short sequence signatures produced from a defined position within an mRNA, and the relative abundance of these signatures in a given library represents a quantitative estimate of expression of that gene. The MPSS signatures are 17 bp in length, and can uniquely identify >95% of all genes in Arabidopsis. |
Seed
Resources |
| The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community |
| ABRC |
| The mission of the ABRC is to acquire, preserve and distribute seed and DNA resources that are useful to the Arabidopsis research community. |
| GARNet |
| GARNet is intended to function as a platform for international Arabidopsis research and for research on other plant species. |
Cis
Elements & Transcription Regulation Resources |
| A referential database with: 435 different names of plant transcription sites 149 from monocots 281 from dicots 5 from other plants describing more than 159 plant promoters |
| PLACE |
| A Database of Plant Cis-acting Regulatory DNA Elements |
| ATTED-II |
| ATTED-II provides co-regulated gene relationships in Arabidopsis thaliana to estimate gene functions |
| Comparative
Genomic Resources |
| GRASSIUS provides a collection of databases for transcription factors (GRASSTFDB), promoters and cis-regulatory elements (GRASSPROMDB) across the grasses, including maize, sugarcane, sorghum and rice. |
|
Microarray Resources |
| Visualize gene expression profiles in different tissues, development stages, phenotypes, and treatments. Find gene correlations and co-expression of gene families. |
| MIAME |
| Minimum Information About a Microarray Experiment that is needed for unambiguous interpretation and reproducibility. |