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bHLH Family Description Reference ClustAlW Alignment Hidden Markov Model Nucleotide Sequences Protein Sequences

Dr. Peter Quail from USDA Plant Gene Expression Center, has kindly provided feedback for BHLH Family transcription factor

(M)IPS <> (S)ALK <> T(A)IR
(C)onfirmed direct targets (U)nconfirmed direct targets

There are currently 161 members identified for this family
TF Locus Id Protein Name Sub Family Gene Name , Synonym Links Sequences BindingSites/NFM Direct Targets Total Direct Interactions
At5g41315 AtbHLH1   GL3, MYC6.2 MSA Nucl-Prot   C(25)  -  U(693) VIEW (719)
At2g31220 AtbHLH10     MSA Nucl-Prot     VIEW (1)
At2g41240 AtbHLH100   BHLH100 MSA Nucl-Prot     VIEW (6)
At5g04150 AtbHLH101   BHLH101 MSA Nucl-Prot     VIEW (4)
At1g69010 AtbHLH102   BIM2 MSA Nucl-Prot     VIEW (2)
At4g21340 AtbHLH103   B70 MSA Nucl-Prot     VIEW (3)
At4g14410 AtbHLH104     MSA Nucl-Prot   C(2)  -  U(7) VIEW (11)
At5g54680 AtbHLH105   ILR3 MSA Nucl-Prot   C(23)  -  U(23) VIEW (46)
At2g41130 AtbHLH106     MSA Nucl-Prot      
At3g56770 AtbHLH107     MSA Nucl-Prot      
At1g25310 AtbHLH108   MEE8 MSA Nucl-Prot     VIEW (1)
At1g68240 AtbHLH109     MSA Nucl-Prot      
At4g36060 AtbHLH11     MSA Nucl-Prot      
At1g27660 AtbHLH110     MSA Nucl-Prot      
At1g31050 AtbHLH111     MSA Nucl-Prot      
At1g61660 AtbHLH112     MSA Nucl-Prot     VIEW (2)
At3g19500 AtbHLH113     MSA Nucl-Prot      
At4g05170 AtbHLH114     MSA Nucl-Prot      
At1g51070 AtbHLH115     MSA Nucl-Prot      
At3g26744 AtbHLH116   ATICE1, ICE1, SCRM MSA Nucl-Prot   U(1) VIEW (2)
At3g22100 AtbHLH117     MSA Nucl-Prot      
At4g25400 AtbHLH118     MSA Nucl-Prot     VIEW (1)
At4g28811 AtbHLH119     MSA Nucl-Prot     VIEW (1)
At4g00480 AtbHLH12   ATMYC1, myc1 MSA Nucl-Prot     VIEW (1)
At5g51790 AtbHLH120     MSA Nucl-Prot     VIEW (1)
At3g19860 AtbHLH121     MSA Nucl-Prot   C(2)  -  U(1) VIEW (5)
At1g51140 AtbHLH122     MSA Nucl-Prot   U(1) VIEW (4)
At3g20640 AtbHLH123     MSA Nucl-Prot     VIEW (1)
At2g46970 AtbHLH124   PIL1 MSA Nucl-Prot     VIEW (4)
At1g62975 AtbHLH125     MSA Nucl-Prot      
At4g25410 AtbHLH126     MSA Nucl-Prot     VIEW (1)
At4g28815 AtbHLH127     MSA Nucl-Prot      
At1g05805 AtbHLH128     MSA Nucl-Prot   C(1)  -  U(1) VIEW (5)
At2g43140 AtbHLH129     MSA Nucl-Prot     VIEW (3)
At1g01260 AtbHLH13   MYC7E MSA Nucl-Prot   C(3)  -  U(3) VIEW (10)
At2g42280 AtbHLH130     MSA Nucl-Prot     VIEW (2)
At4g38071 AtbHLH131     MSA Nucl-Prot      
At3g62090 AtbHLH132   PIF6, PIL2 MSA Nucl-Prot     VIEW (4)
At2g20095 AtbHLH133     MSA Nucl-Prot      
At5g15160 AtbHLH134     MSA Nucl-Prot     VIEW (4)
At1g74500 AtbHLH135     MSA Nucl-Prot     VIEW (1)
At5g39860 AtbHLH136   PRE1 MSA Nucl-Prot     VIEW (3)
At5g50915 AtbHLH137     MSA Nucl-Prot     VIEW (2)
At2g31215 AtbHLH138     MSA Nucl-Prot     VIEW (1)
At5g43175 AtbHLH139     MSA Nucl-Prot      
At4g00870 AtbHLH14     MSA Nucl-Prot     VIEW (2)
At5g38860 AtbHLH141   BIM3 MSA Nucl-Prot      
At5g64340 AtbHLH142   SAC51 MSA Nucl-Prot   U(1) VIEW (4)
At5g09460 AtbHLH143     MSA Nucl-Prot   U(1) VIEW (5)
At1g29950 AtbHLH144     MSA Nucl-Prot   U(1) VIEW (2)
At5g50010 AtbHLH145     MSA Nucl-Prot      
At4g30180 AtbHLH146     MSA Nucl-Prot     VIEW (2)
At3g17100 AtbHLH147     MSA Nucl-Prot   C(1)  -  U(1) VIEW (5)
At3g06590 AtbHLH148     MSA Nucl-Prot     VIEW (1)
At1g09250 AtbHLH149     MSA Nucl-Prot     VIEW (3)
At2g20180 AtbHLH15   PIF1, PIL5 MSA Nucl-Prot   C(191)  -  U(560) VIEW (753)
At3g05800 AtbHLH150     MSA Nucl-Prot     VIEW (1)
At2g47270 AtbHLH151     MSA Nucl-Prot   C(3)  -  U(163) VIEW (168)
At1g22380 AtbHLH152   AtUGT85A3 MSA Nucl-Prot     VIEW (1)
At1g05710 AtbHLH153     MSA Nucl-Prot     VIEW (3)
At2g31730 AtbHLH154     MSA Nucl-Prot     VIEW (1)
At2g31280 AtbHLH155   CPUORF7 MSA Nucl-Prot      
At2g27230 AtbHLH156   LHW MSA Nucl-Prot      
At1g64625 AtbHLH157     MSA Nucl-Prot     VIEW (1)
At2g43060 AtbHLH158     MSA Nucl-Prot     VIEW (7)
At4g30410 AtbHLH159     MSA Nucl-Prot     VIEW (2)
At4g00050 AtbHLH16   UNE10 MSA Nucl-Prot     VIEW (2)
At1g71200 AtbHLH160     MSA Nucl-Prot      
At3g47710 AtbHLH161     MSA Nucl-Prot     VIEW (2)
At4g20970 AtbHLH162     MSA Nucl-Prot      
At2g46510 AtbHLH17   ATAIB MSA Nucl-Prot     VIEW (2)
At2g22750 AtbHLH18     MSA Nucl-Prot      
At2g22760 AtbHLH19     MSA Nucl-Prot     VIEW (1)
At1g63650 AtbHLH2   ATMYC-2, EGL1, EGL3 MSA Nucl-Prot   U(1) VIEW (1)
At2g22770 AtbHLH20   NAI1 MSA Nucl-Prot     VIEW (1)
At2g16910 AtbHLH21   AMS MSA Nucl-Prot      
At4g21330 AtbHLH22   DYT1 MSA Nucl-Prot     VIEW (1)
At4g28790 AtbHLH23     MSA Nucl-Prot     VIEW (1)
At4g36930 AtbHLH24   SPT MSA Nucl-Prot     VIEW (1)
At4g37850 AtbHLH25   FIT1 MSA Nucl-Prot     VIEW (1)
At1g02340 AtbHLH26   FBI1, HFR1, REP1, RSF1 MSA Nucl-Prot     VIEW (8)
At4g29930 AtbHLH27     MSA Nucl-Prot     VIEW (2)
At5g46830 AtbHLH28     MSA Nucl-Prot      
At2g28160 AtbHLH29   ATBHLH029, ATBHLH29, BHLH029, FIT1, FRU MSA Nucl-Prot     VIEW (1)
At4g16430 AtbHLH3     MSA Nucl-Prot     VIEW (1)
At1g68810 AtbHLH30     MSA Nucl-Prot   U(1) VIEW (1)
At1g59640 AtbHLH31   BPE, BPEP, BPEUB, ZCW32 MSA Nucl-Prot     VIEW (3)
At3g25710 AtbHLH32   BHLH32 MSA Nucl-Prot     VIEW (1)
At1g12860 AtbHLH33   ICE2, SCRM2 MSA Nucl-Prot      
At3g23210 AtbHLH34     MSA Nucl-Prot   C(3)  -  U(8) VIEW (13)
At5g57150 AtbHLH35     MSA Nucl-Prot     VIEW (2)
At5g51780 AtbHLH36     MSA Nucl-Prot      
At3g50330 AtbHLH37   HEC2 MSA Nucl-Prot     VIEW (2)
At3g56970 AtbHLH38   BHLH038, ORG2 MSA Nucl-Prot     VIEW (4)
At3g56980 AtbHLH39   BHLH039, ORG3 MSA Nucl-Prot   U(1) VIEW (5)
At4g17880 AtbHLH4     MSA Nucl-Prot     VIEW (1)
At4g00120 AtbHLH40   EDA33, GT140, IND, IND1 MSA Nucl-Prot     VIEW (1)
At5g56960 AtbHLH41     MSA Nucl-Prot     VIEW (1)
At4g09820 AtbHLH42   TT8 MSA Nucl-Prot   C(1) VIEW (1)
At5g09750 AtbHLH43   HEC3 MSA Nucl-Prot      
At1g18400 AtbHLH44   BEE1 MSA Nucl-Prot     VIEW (3)
At3g06120 AtbHLH45   MUTE MSA Nucl-Prot     VIEW (1)
At5g08130 AtbHLH46   BIM1 MSA Nucl-Prot     VIEW (3)
At3g47640 AtbHLH47     MSA Nucl-Prot   C(3)  -  U(66) VIEW (72)
At2g42300 AtbHLH48     MSA Nucl-Prot     VIEW (2)
At1g68920 AtbHLH49     MSA Nucl-Prot   C(1)  -  U(1) VIEW (2)
At5g46760 AtbHLH5   ATR2 MSA Nucl-Prot     VIEW (2)
At1g73830 AtbHLH50   BEE3 MSA Nucl-Prot     VIEW (2)
At2g40200 AtbHLH51     MSA Nucl-Prot      
At1g30670 AtbHLH52     MSA Nucl-Prot      
At2g34820 AtbHLH53     MSA Nucl-Prot      
At1g27740 AtbHLH54     MSA Nucl-Prot     VIEW (2)
At1g12540 AtbHLH55     MSA Nucl-Prot      
At4g28800 AtbHLH56     MSA Nucl-Prot      
At4g01460 AtbHLH57     MSA Nucl-Prot     VIEW (3)
At4g36540 AtbHLH58   BEE2 MSA Nucl-Prot   U(1) VIEW (3)
At4g02590 AtbHLH59   UNE12 MSA Nucl-Prot     VIEW (1)
At1g32640 AtbHLH6   ATMYC2, JAI1, JIN1, MYC2, RAP-1, RD22BP1, ZBF1 MSA Nucl-Prot bindingsites C(3)  -  U(3) VIEW (8)
At3g57800 AtbHLH60     MSA Nucl-Prot     VIEW (4)
At5g10570 AtbHLH61     MSA Nucl-Prot      
At3g07340 AtbHLH62     MSA Nucl-Prot   C(1)  -  U(1) VIEW (5)
At4g34530 AtbHLH63   CIB1 MSA Nucl-Prot     VIEW (3)
At2g18300 AtbHLH64     MSA Nucl-Prot     VIEW (2)
At3g59060 AtbHLH65   PIF5, PIL6 MSA Nucl-Prot   C(2) VIEW (6)
At2g24260 AtbHLH66     MSA Nucl-Prot     VIEW (2)
At3g61950 AtbHLH67     MSA Nucl-Prot   C(1) VIEW (2)
At4g29100 AtbHLH68     MSA Nucl-Prot      
At4g30980 AtbHLH69     MSA Nucl-Prot     VIEW (1)
At1g03040 AtbHLH7     MSA Nucl-Prot     VIEW (1)
At2g46810 AtbHLH70     MSA Nucl-Prot     VIEW (2)
At5g46690 AtbHLH71   bHLH071 MSA Nucl-Prot     VIEW (4)
At5g61270 AtbHLH72   PIF7 MSA Nucl-Prot     VIEW (4)
At5g67110 AtbHLH73   ALC MSA Nucl-Prot   C(1) VIEW (3)
At1g10120 AtbHLH74     MSA Nucl-Prot     VIEW (1)
At1g25330 AtbHLH75     MSA Nucl-Prot     VIEW (1)
At1g26260 AtbHLH76   CIB5 MSA Nucl-Prot      
At3g23690 AtbHLH77     MSA Nucl-Prot   C(2)  -  U(2) VIEW (5)
At5g48560 AtbHLH78     MSA Nucl-Prot     VIEW (1)
At5g62610 AtbHLH79     MSA Nucl-Prot   C(3)  -  U(3) VIEW (6)
At1g09530 AtbHLH8   PAP3, PIF3, POC1 MSA Nucl-Prot   C(12)  -  U(631) VIEW (645)
At1g35460 AtbHLH80     MSA Nucl-Prot   U(1) VIEW (2)
At4g09180 AtbHLH81     MSA Nucl-Prot     VIEW (2)
At5g58010 AtbHLH82     MSA Nucl-Prot      
At1g66470 AtbHLH83     MSA Nucl-Prot     VIEW (1)
At2g14760 AtbHLH84     MSA Nucl-Prot      
At4g33880 AtbHLH85     MSA Nucl-Prot      
At5g37800 AtbHLH86     MSA Nucl-Prot      
At3g21330 AtbHLH87     MSA Nucl-Prot     VIEW (3)
At5g67060 AtbHLH88   HEC1 MSA Nucl-Prot     VIEW (6)
At1g06170 AtbHLH89     MSA Nucl-Prot     VIEW (2)
At2g43010 AtbHLH9   PIF4, SRL2 MSA Nucl-Prot   C(4)  -  U(1639) VIEW (1646)
At1g10610 AtbHLH90     MSA Nucl-Prot      
At2g31210 AtbHLH91     MSA Nucl-Prot      
At5g43650 AtbHLH92     MSA Nucl-Prot     VIEW (1)
At5g65640 AtbHLH93   bHLH093 MSA Nucl-Prot      
At1g22490 AtbHLH94     MSA Nucl-Prot     VIEW (2)
At4g49770 AtbHLH95     MSA Nucl-Prot      
At1g72210 AtbHLH96     MSA Nucl-Prot     VIEW (2)
At3g24140 AtbHLH97   FMA MSA Nucl-Prot      
At5g53210 AtbHLH98   SPCH MSA Nucl-Prot     VIEW (1)
At5g65320 AtbHLH99     MSA Nucl-Prot      

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