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MADS Family Description Reference ClustAlW Alignment Hidden Markov Model Nucleotide Sequences Protein Sequences

Dr. Laura Zahn from Penn State Biology Dept, has kindly provided feedback for MADS family transcription factor

(M)IPS <> (S)ALK <> T(A)IR
(C)onfirmed direct targets (U)nconfirmed direct targets

There are currently 109 members identified for this family
TF Locus Id Protein Name Sub Family Gene Name , Synonym Links Sequences BindingSites/NFM Direct Targets Total Direct Interactions
At1g17310   TypeI AGL100 MSA Nucl-Prot   U(1) VIEW (2)
At5g27050   TypeI AGL101 MSA Nucl-Prot      
At1g47760   TypeI AGL102 MSA Nucl-Prot      
At3g18650   TypeI agl103 MSA Nucl-Prot      
At5g37420   TypeI AGL105 MSA Nucl-Prot      
At1g65360   TypeI AGL23 MSA Nucl-Prot      
At5g26870   TypeI AGL26 MSA Nucl-Prot      
At1g01530   TypeI AGL28 MSA Nucl-Prot      
At2g34440   TypeI AGL29 MSA Nucl-Prot      
At5g26575   TypeI AGL34 MSA Nucl-Prot      
At5g26630   TypeI AGL35 MSA Nucl-Prot   C(3) VIEW (3)
At5g26650   TypeI AGL36 MSA Nucl-Prot     VIEW (2)
At1g65330   TypeI AGL37, PHE1, PHeres1 MSA Nucl-Prot     VIEW (1)
At1g65300   TypeI AGL38, PHE2 MSA Nucl-Prot      
At5g27130   TypeI AGL39 MSA Nucl-Prot      
At4g36590   TypeI AGL40 MSA Nucl-Prot      
At2g26880   TypeI AGL41 MSA Nucl-Prot      
At5g40220   TypeI AGL43 MSA Nucl-Prot      
At3g05860   TypeI AGL45 MSA Nucl-Prot      
At2g28700   TypeI AGL46 MSA Nucl-Prot      
At5g55690   TypeI AGL47 MSA Nucl-Prot      
At2g40210   TypeI AGL48 MSA Nucl-Prot      
At1g60040   TypeI AGL49 MSA Nucl-Prot      
At1g59810   TypeI AGL50 MSA Nucl-Prot      
At4g02240   TypeI AGL51 MSA Nucl-Prot      
At4g11250   TypeI AGL52 MSA Nucl-Prot      
At5g27070   TypeI AGL53 MSA Nucl-Prot      
At5g27090   TypeI AGL54 MSA Nucl-Prot      
At1g60920   TypeI agl55 MSA Nucl-Prot      
At1g60880   TypeI AGL56 MSA Nucl-Prot   C(3) VIEW (3)
At3g04100   TypeI AGL57 MSA Nucl-Prot     VIEW (2)
At1g28450   TypeI AGL58 MSA Nucl-Prot      
At1g28460   TypeI AGL59 MSA Nucl-Prot      
At1g72350   TypeI AGL60 MSA Nucl-Prot      
At2g24840   TypeI AGL61, DIA MSA Nucl-Prot      
At5g60440   TypeI AGL62 MSA Nucl-Prot      
At1g29960   TypeI AGL64 MSA Nucl-Prot      
At5g38620   TypeI AGL73 MSA Nucl-Prot      
At1g48150   TypeI AGL74 MSA Nucl-Prot      
At5g41200   TypeI AGL75 MSA Nucl-Prot      
At5g40120   TypeI AGL76 MSA Nucl-Prot      
At5g38740   TypeI AGL77 MSA Nucl-Prot      
At5g65330   TypeI AGL78 MSA Nucl-Prot      
At5g48670   TypeI AGL80, FEM111 MSA Nucl-Prot      
At5g39750   TypeI AGL81, EMB3008 MSA Nucl-Prot      
At5g58890   TypeI AGL82 MSA Nucl-Prot      
At5g49490   TypeI AGL83 MSA Nucl-Prot      
At5g49420   TypeI AGL84 MSA Nucl-Prot      
At1g54760   TypeI AGL85 MSA Nucl-Prot   C(3) VIEW (3)
At1g31630   TypeI AGL86 MSA Nucl-Prot      
At1g22590   TypeI AGL87 MSA Nucl-Prot      
At2g11990   TypeI AGL88 MSA Nucl-Prot      
At5g27580   TypeI AGL89 MSA Nucl-Prot      
At5g27960   TypeI AGL90 MSA Nucl-Prot      
At3g66656   TypeI AGL91 MSA Nucl-Prot      
At1g31640   TypeI AGL92 MSA Nucl-Prot     VIEW (1)
At5g26950   TypeI AGL93 MSA Nucl-Prot      
At2g15660   TypeI AGL95 MSA Nucl-Prot      
At5g06500   TypeI AGL96 MSA Nucl-Prot      
At1g46408   TypeI AGL97 MSA Nucl-Prot      
At5g39810   TypeI AGL98 MSA Nucl-Prot      
At5g04640   TypeI AGL99 MSA Nucl-Prot      
At1g33070   TypeI   MSA Nucl-Prot      
At4g18960   TypeII AG MSA Nucl-Prot bindingsites C(9)  -  U(30) VIEW (47)
At3g58780   TypeII AGL1, SHP1 MSA Nucl-Prot     VIEW (3)
At1g26310   TypeII agl10, CAL, CAL1 MSA Nucl-Prot     VIEW (2)
At1g22130   TypeII AGL104 MSA Nucl-Prot      
At4g09960   TypeII AGL11, STK MSA Nucl-Prot     VIEW (2)
At1g71692   TypeII AGL12, XAL1 MSA Nucl-Prot      
At3g61120   TypeII AGL13 MSA Nucl-Prot      
At4g11880   TypeII AGL14 MSA Nucl-Prot      
At5g13790   TypeII AGL15 MSA Nucl-Prot   C(22)  -  U(3920) VIEW (3945)
At3g57230   TypeII AGL16 MSA Nucl-Prot   C(1)  -  U(1) VIEW (3)
At2g22630   TypeII AGL17 MSA Nucl-Prot      
At3g57390   TypeII AGL18 MSA Nucl-Prot     VIEW (2)
At4g22950   TypeII AGL19, GL19 MSA Nucl-Prot     VIEW (3)
At5g15800   TypeII AGL2, SEP1 MSA Nucl-Prot     VIEW (1)
At2g45660   TypeII AGL20, SOC, SOC1 MSA Nucl-Prot   U(6) VIEW (17)
At4g37940   TypeII AGL21 MSA Nucl-Prot     VIEW (3)
At2g22540   TypeII AGL22, SVP MSA Nucl-Prot   U(2) VIEW (4)
At4g24540   TypeII AGL24 MSA Nucl-Prot     VIEW (3)
At5g10140   TypeII AGL25, FLC, FLF, FLF/FLC MSA Nucl-Prot   C(3) VIEW (4)
At1g77080   TypeII AGL27, FLM, MAF1, MAF1/FLM MSA Nucl-Prot     VIEW (1)
At2g03710   TypeII AGL3, SEP4 MSA Nucl-Prot     VIEW (7)
At2g03060   TypeII AGL30 MSA Nucl-Prot      
At5g65050   TypeII AGL31, MAF2 MSA Nucl-Prot     VIEW (2)
At5g23260   TypeII ABS, AGL32, TT16 MSA Nucl-Prot     VIEW (1)
At2g26320   TypeII AGL33 MSA Nucl-Prot      
At3g02310   TypeII AGL4, SEP2 MSA Nucl-Prot   U(1) VIEW (3)
At5g62165   TypeII AGL42 MSA Nucl-Prot      
At2g14210   TypeII AGL44, ANR1 MSA Nucl-Prot     VIEW (6)
At2g42830   TypeII AGL5, SHP2 MSA Nucl-Prot     VIEW (4)
At2g45650   TypeII AGL6 MSA Nucl-Prot     VIEW (1)
At1g31140   TypeII agl63 MSA Nucl-Prot     VIEW (1)
At1g18750   TypeII AGL65 MSA Nucl-Prot      
At1g77980   TypeII AGL66 MSA Nucl-Prot      
At1g77950   TypeII AGL67 MSA Nucl-Prot     VIEW (1)
At5g65080   TypeII AGL68, FCL1, MAF5 MSA Nucl-Prot     VIEW (1)
At5g65070   TypeII AGL69, FCL2, FCL4, MAF4 MSA Nucl-Prot     VIEW (1)
At1g69120   TypeII AGL7, AP1 MSA Nucl-Prot bindingsites C(14) VIEW (21)
At5g65060   TypeII AGL70, FCL3, MAF3 MSA Nucl-Prot     VIEW (2)
At5g51870   TypeII AGL71 MSA Nucl-Prot      
At5g51860   TypeII AGL72 MSA Nucl-Prot      
At3g30260   TypeII AGL79 MSA Nucl-Prot      
At5g60910   TypeII AGL8, FUL MSA Nucl-Prot     VIEW (2)
At1g24260   TypeII AGL9, SEP3 MSA Nucl-Prot   C(15)  -  U(4085) VIEW (4105)
At1g69540   TypeII AGL94 MSA Nucl-Prot      
At3g54340   TypeII AP3 MSA Nucl-Prot   C(4) VIEW (11)
At5g20240   TypeII PI MSA Nucl-Prot   C(4) VIEW (5)

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