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Homeobox Family Description Reference ClustAlW Alignment Hidden Markov Model Nucleotide Sequences Protein Sequences

Dr. Daniel Gonzalez from Universidad Nacional Del Litoral, Argentina has kindly provided feedback for Homeobox family transcription factor

(M)IPS <> (S)ALK <> T(A)IR
(C)onfirmed direct targets (U)nconfirmed direct targets

There are currently 91 members identified for this family
TF Locus Id Protein Name Sub Family Gene Name , Synonym Links Sequences BindingSites/NFM Direct Targets Total Direct Interactions
At4g32980   BEL ATH1 MSA Nucl-Prot     VIEW (3)
At5g41410   BEL BEL1 MSA Nucl-Prot   U(1) VIEW (1)
At4g36870   BEL BLH2, SAW1 MSA Nucl-Prot     VIEW (9)
At1g75410   BEL BLH3 MSA Nucl-Prot   C(1)  -  U(2) VIEW (30)
At2g23760   BEL BLH4, SAW2 MSA Nucl-Prot     VIEW (3)
At1g19700   BEL BEL10, BLH10, BLH5 MSA Nucl-Prot     VIEW (9)
At5g02030   BEL BLH9, BLR, HB-6, LSN, PNY, RPL, VAN MSA Nucl-Prot   C(1) VIEW (1)
At2g16400   BEL BLH7 MSA Nucl-Prot     VIEW (2)
At2g27220   BEL BLH5 MSA Nucl-Prot      
At4g34610   BEL BLH6 MSA Nucl-Prot   C(2)  -  U(2) VIEW (11)
At1g75430   BEL BLH11 MSA Nucl-Prot     VIEW (2)
At2g35940   BEL BLH1, EDA29 MSA Nucl-Prot     VIEW (1)
At2g27990   BEL BLH8, PNF, POUND-FOOLISH MSA Nucl-Prot      
At3g01470   HD-Zip I ATHB-1, ATHB1, HAT5, HD-ZIP-1 MSA Nucl-Prot     VIEW (2)
At3g61890   HD-Zip I ATHB-12, ATHB12 MSA Nucl-Prot     VIEW (2)
At1g69780   HD-Zip I ATHB13 MSA Nucl-Prot     VIEW (2)
At4g40060   HD-Zip I ATHB-16, ATHB16 MSA Nucl-Prot     VIEW (1)
At5g15150   HD-Zip I ATHB-3, ATHB3, HAT7 MSA Nucl-Prot     VIEW (4)
At5g65310   HD-Zip I ATHB-5, ATHB5 MSA Nucl-Prot     VIEW (1)
At2g22430   HD-Zip I ATHB6 MSA Nucl-Prot   C(2)  -  U(1) VIEW (4)
At2g46680   HD-Zip I ATHB-7, ATHB7 MSA Nucl-Prot     VIEW (4)
At3g01220   HD-Zip I ATHB20 MSA Nucl-Prot      
At5g53980   HD-Zip I ATHB52 MSA Nucl-Prot     VIEW (2)
At2g36610   HD-Zip I ATHB22 MSA Nucl-Prot      
At2g18550   HD-Zip I ATHB21, HB-2 MSA Nucl-Prot     VIEW (3)
At5g66700   HD-Zip I ATHB53, HB-8, HB53 MSA Nucl-Prot     VIEW (3)
At5g03790   HD-Zip I ATHB51, LMI1 MSA Nucl-Prot   U(1) VIEW (4)
At1g27050   HD-Zip I ATHB54 MSA Nucl-Prot     VIEW (4)
At4g36740   HD-Zip I ATHB40, HB-5 MSA Nucl-Prot     VIEW (3)
At1g26960   HD-Zip I AtHB23 MSA Nucl-Prot     VIEW (2)
At2g01430   HD-Zip II ATHB-17, ATHB17 MSA Nucl-Prot   C(3) VIEW (3)
At4g16780   HD-Zip II ATHB-2, ATHB2, HAT4 MSA Nucl-Prot     VIEW (6)
At2g44910   HD-Zip II ATHB-4, ATHB4 MSA Nucl-Prot     VIEW (6)
At4g17460   HD-Zip II HAT1 MSA Nucl-Prot   C(1)  -  U(1) VIEW (5)
At5g06710   HD-Zip II HAT14 MSA Nucl-Prot   U(1) VIEW (4)
At5g47370   HD-Zip II HAT2 MSA Nucl-Prot     VIEW (9)
At4g37790   HD-Zip II HAT22 MSA Nucl-Prot   C(2)  -  U(2) VIEW (7)
At3g60390   HD-Zip II HAT3 MSA Nucl-Prot     VIEW (5)
At2g22800   HD-Zip II HAT9 MSA Nucl-Prot     VIEW (2)
At1g70920   HD-Zip II ATHB18 MSA Nucl-Prot     VIEW (1)
At2g34710   HD-Zip III ATHB-14, ATHB14, PHB, PHB-1D MSA Nucl-Prot   U(1) VIEW (118)
At1g52150   HD-Zip III ATHB-15, ATHB15, CAN, CNA, ICU4 MSA Nucl-Prot   C(1)  -  U(2) VIEW (3)
At4g32880   HD-Zip III ATHB-8, ATHB8 MSA Nucl-Prot   U(1) VIEW (2)
At1g30490   HD-Zip III ATHB9, PHV MSA Nucl-Prot   C(4)  -  U(8) VIEW (58)
At5g60690   HD-Zip III IFL, IFL1, REV MSA Nucl-Prot   C(2)  -  U(7) VIEW (88)
At4g00730   HD-Zip IV AHDP, ANL2 MSA Nucl-Prot     VIEW (3)
At1g79840   HD-Zip IV GL2 MSA Nucl-Prot   C(1) VIEW (5)
At4g21750   HD-Zip IV ATML1 MSA Nucl-Prot     VIEW (1)
At4g25530   HD-Zip IV FWA, HDG6 MSA Nucl-Prot     VIEW (2)
At3g61150   HD-Zip IV HD-GL2-1, HDG1 MSA Nucl-Prot     VIEW (3)
At1g17920   HD-Zip IV HDG12 MSA Nucl-Prot      
At2g32370   HD-Zip IV HDG3 MSA Nucl-Prot      
At1g34650   HD-Zip IV HDG10 MSA Nucl-Prot      
At1g73360   HD-Zip IV ATHDG11, EDT1, HDG11 MSA Nucl-Prot      
At4g17710   HD-Zip IV HDG4 MSA Nucl-Prot      
At5g52170   HD-Zip IV HDG7 MSA Nucl-Prot     VIEW (1)
At1g05230   HD-Zip IV HDG2 MSA Nucl-Prot     VIEW (1)
At5g17320   HD-Zip IV HDG9 MSA Nucl-Prot      
At5g46880   HD-Zip IV HB-7, HDG5 MSA Nucl-Prot     VIEW (1)
At3g03260   HD-Zip IV HDG8 MSA Nucl-Prot     VIEW (1)
At4g04890   HD-Zip IV PDF2 MSA Nucl-Prot      
At4g08150   KNOX I BP, BP1, KNAT1 MSA Nucl-Prot   C(3) VIEW (4)
At1g70510   KNOX I ATK1, KNAT2 MSA Nucl-Prot     VIEW (2)
At1g23380   KNOX I KNAT6, KNAT6L, KNAT6S MSA Nucl-Prot     VIEW (3)
At1g62360   KNOX I BUM, BUM1, SHL, STM, WAM, WAM1 MSA Nucl-Prot      
At5g25220   KNOX II KNAT3 MSA Nucl-Prot     VIEW (2)
At5g11060   KNOX II KNAT4 MSA Nucl-Prot     VIEW (3)
At4g32040   KNOX II KNAT5 MSA Nucl-Prot      
At1g62990   KNOX II IXR11, KNAT7 MSA Nucl-Prot   C(3)  -  U(4) VIEW (55)
At4g02560   LD LD MSA Nucl-Prot     VIEW (1)
At3g19510   PHD-finger HAT3.1 MSA Nucl-Prot      
At4g29940   PHD-finger PRHA MSA Nucl-Prot bindingsites   VIEW (3)
At5g44180   Similar to HOX7 (tomato)   MSA Nucl-Prot      
At1g28420   Similar to HOX7 (tomato) HB-1 MSA Nucl-Prot      
At4g03250   Similar to HOX7 (tomato) HOX7, Similar, to MSA Nucl-Prot      
At5g46010   WOX   MSA Nucl-Prot      
At3g18010   WOX WOX1 MSA Nucl-Prot     VIEW (2)
At1g20710   WOX WOX10 MSA Nucl-Prot      
At3g03660   WOX WOX11 MSA Nucl-Prot      
At5g17810   WOX WOX12 MSA Nucl-Prot      
At4g35550   WOX HB-4, WOX13 MSA Nucl-Prot     VIEW (1)
At1g20700   WOX ATWOX14, PALE2, WOX14 MSA Nucl-Prot      
At5g59340   WOX WOX2 MSA Nucl-Prot      
At2g28610   WOX PRS, PRS1, WOX3 MSA Nucl-Prot     VIEW (2)
At1g46480   WOX WOX4 MSA Nucl-Prot      
At3g11260   WOX WOX5 MSA Nucl-Prot      
At2g01500   WOX HOS9, PFS2, WOX6 MSA Nucl-Prot     VIEW (1)
At5g05770   WOX WOX7 MSA Nucl-Prot      
At5g45980   WOX STPL, WOX8 MSA Nucl-Prot      
At2g33880   WOX HB-3, STIMPY, STIP, WOX9 MSA Nucl-Prot      
At2g17950   WOX PGA6, WUS, WUS1, WUSCHEL MSA Nucl-Prot   C(1) VIEW (2)

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